Weising
K, Gardner RC (1999) A set of conserved PCR primers for the analysis
of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous
angiosperms. Genome 42(1):9-19
|
Primer name |
Primer sequence |
Length in bases |
Exp. annealing temperature |
Allele size range in Angiosperms |
|
ccmp1 [F] |
caggtaaacttctcaacgga |
20 |
50 |
122-143 |
|
ccmp1 [R] |
ccgaagtcaaaagagcgatt |
20 |
|
|
|
|
|
|
|
|
ccmp2 [F] |
gatcccggacgtaatcctg |
19 |
50 |
166-234 |
|
ccmp2 [R] |
atcgtaccgagggttcgaat |
20 |
|
|
|
|
|
|
|
|
ccmp3 [F] |
cagaccaaaagctgacatag |
20 |
50 |
89-119 |
|
ccmp3 [R] |
gtttcattcggctcctttat |
20 |
|
|
|
|
|
|
|
|
ccmp4 [F] |
aatgctgaatcgaygaccta |
20 |
50 |
115-220 |
|
ccmp4 [R] |
ccaaaatattbggaggactct |
21 |
|
|
|
|
|
|
|
|
ccmp5 [F] |
tgttccaatatcttcttgtcattt |
24 |
50 |
77-145 |
|
ccmp5 [R] |
aggttccatcggaacaattat |
21 |
|
|
|
|
|
|
|
|
ccmp6 [F] |
cgatgcatatgtagaaagcc |
20 |
50 |
93-111 |
|
ccmp6 [R] |
cattacgtgcgactatctcc |
20 |
|
|
|
|
|
|
|
|
ccmp7 [F] |
caacatataccactgtcaag |
20 |
50 |
129-151 |
|
ccmp7 [R] |
acatcattattgtatactctttc |
23 |
|
|
|
|
|
|
|
|
ccmp8 [F] |
ttggctactctaaccttccc |
20 |
50 |
65-77 |
|
ccmp8 R] |
ttctttcttatttcgcagdgaa |
22 |
|
|
|
|
|
|
|
|
ccmp9 [F] |
ggatttgtacatataggaca |
20 |
50 |
96-104 |
|
ccmp9 [R] |
ctcaactctaagaaatacttg |
21 |
|
|
|
|
|
|
|
|
ccmp10 [F] |
tttttttttagtgaacgtgtca |
22 |
50 |
91-300 |
|
ccmp10 [R] |
ttcgtcgdcgtagtaaatag |
20 |
|
|
|